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Matt Blow
… Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger … 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living Growth and during Nitrogen-Fixing … Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has … comparative genomic analyses.   The Impact There are 900 species of eucalyptus. The trees are fast-growing plantation …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … pool of genetic material comprised by all members of a species, the pan-genome of haloarchaea contains the parts of … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes … U.S. Department of Energy Joint Genome Institute (https:// …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the … expanded 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have … harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have … #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. … of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in order … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for other plants, like the …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest … composition and functional potential varied across tree species and sites, reflecting ecological patterns shaped by …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, …
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