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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … microbiologist at the University of East Anglia, leads this effort to understand what makes polar photosynthesizers … such as photosynthesis and gene regulation.  Mock and his team then linked those species-level observations with data …
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Leveraging a Structural Blueprint to Rationally Engineer the Rieske Oxygenase TsaM
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … The Impact Secondary metabolites are useful in a variety of fields including biotechnology, medicine and agriculture. … and collaborate on solutions.  Compared with past efforts at the JGI, like IMG-ABC, and other academic …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … of the Microscale Applications group at the JGI, whose team uses a semi-automated, standardized process to carry … last year, JGI’s user community has helped propel multiple efforts along these lines, all with the goals of better data …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … applications they may have in a wide range of research fields. A public repository of 52,515 microbial draft … about the biology and diversity of uncultured microbes.” Teams of researchers worked on multiple analyses harnessing …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … Lab). “We’re very excited to start working with this years’ crop of CSP recipients, over half of which are first-time …
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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Emiley Eloe-Fadrosh
Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her … at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate work in …
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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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JGI Interns at UC Merced Earn CAMP Merit Awards
As part of the ongoing partnership between DOE JGI and UC Merced to … in science, technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were among 5 UC …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its roots … these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in Stéphane …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … others may be useful in the biofuel and synthetic biology fields. In a living cell, triplets of nucleotides, or … about what it means to be a scientist. “To see how team science is done at an advanced and large research …
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