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Kjiersten Fagnan
… bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s … Research Division. As a postdoc, her research focused on stable and accurate computational methods for … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists have tried to … of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, built a …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, … serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … UEC is an opportunity to help develop the JGI’s community outreach efforts with diversity, equity and inclusion in …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … of years evolving tactics against potential threats. “Because plants can’t run away, they’ve evolved these really … To get to that point, industrial facilities will need large-scale approaches to processing plant biomass. Here, …
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The JGI announces 2024 awardees for our Community Science Program annual call
… Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s User Programs. “These PIs have proposed research that … various important scientific questions relevant to the DOE’s mission, and I look forward to seeing their outcomes.” …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … work, enabled in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Team Science Reveals Important Protein in Poplar
… With increased lignin and iron, engineered poplar can be used to develop bioproducts for industrial applications. For … materials such as cement or adhesives. Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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