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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist with interests in … are not easy to break down, as well as developing synthetic biology tools that can help produce value-added products …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … and algae’s roles in nutrient cycling, now a facet of the  Fungal & Algal Program . For example, green algae represent …
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JGI-USCCN Strain Sequencing Opportunity
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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The fungus that made itself at home
… from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive in … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Marcel Huntemann (Cross-field)  Natalia Ivanova (Biology and Biochemistry)  Nikos Kyrpides (Biology and … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, … the Oak Ridge National Laboratory (ORNL) sponsored by the Office of Biological and Environmental Research at the …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … in themselves. For example, a few organisms originally sequenced in the Hungate1000 collection harbor enzymes that …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … program to advance a fundamental understanding of genome biology, and develop genome-scale engineering technologies … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a …
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Leo Baumgart
… in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … of Georgia whose work is at the interface between biology and computer science. Bik and her research group are … professor at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on …
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