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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Frederik Schulz
… Dr. Schulz established a single-cell-based discovery pipeline and enrichment metagenomics for terrestrial …
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Mike Sneddon
… data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s … Informatics team in delivering validated bioinformatics pipelines and a laboratory information management (LIMS) … Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and Emonet, T. Efficient …
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Webinar: Introducing the BioSANS capability
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Applying Viral Genomics Expertise to Understanding the Human Virome
… cycles can help researchers contribute toward developing the bioeconomy. Now, JGI researchers are lending their expertise in developing and managing public viral genomics resources such as … (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads …
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Scaling Up Existing Skill Sets
… is something I didn’t even know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in … with the JGI had on your plans to pursue a STEM career? I aspire to pursue a career in research and JGI has been the … The JGI experiences are just so amazing and truly an inspiration to me. Name: Brenda Yu Class Year: 1st year …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the … In just two months, the students participated in networking workshops, data carpentry hackathons, and also made new … here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika …
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A Collaboration to Improve Plant Genome Annotations Across Species
… a JGI Community Science Program project and another is Lupinus albus from a non-JGI project. Sarah:  I assume you … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function … descriptions from nearest phylogenetic neighbors. Our pipeline allowed us to add expression-derived additional …
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Complete Genome Sequence of Rahnella aquatilis CIP 78.65
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A Natural Mechanism Can Turbocharge Viral Evolution
… to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene might boost … a JGI bioinformatics research scientist, found that pieces of viruses with DGRs were found, on average, in … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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Mapping the Earth’s Hidden Fungal Kingdom
… genes and lay a future-ready foundation     Over the past billion years, fungi have spread quietly throughout our … nearly 30 times older than the entire human lineage. Yet despite their ubiquity and ancient origins, fungi remain … most comprehensive collections of fungal genomes. A sweeping analysis published in Nature Reviews Microbiology of …
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