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JGI Announces 2023 Community Science Program Awardees
Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genomics, inter-organismal interactions, understanding natural communities important for carbon storage, nutrient …
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus … viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic …
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Synthetic biology open language (SBOL) version 3.0.0
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … predict how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … (EEAD-CSIC) (Spain); Fundación ARAID (Spain); University of California, Berkeley; Gregor Mendel Institute of Molecular …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… genes. The data from that study is now used across California State University campuses for biotechnology …
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Busting the Unbreakable Lignin
… in the stomachs of livestock — are actually capable of naturally modifying lignin.  The Impact Traditional methods … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … (MAO), US Army Research Office contract W911NF-19-1-0010 (MAO), National Science Foundation grant MCB-1553721 …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the … University of Thessalonica (Greece), and the University of California, Berkeley were also involved in the work. Other …
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The Surprising Structure of a Shrub Willow Sex Chromosome
Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of …
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