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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data …
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I-Min (Amy) Chen
… in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data … one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific … responsible for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing … researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational … . … 1000 Fungal Genomes Project on Mycocosm … Datasets …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical … sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, …
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Microbial Genomics & Metagenomics (MGM) Workshop
… (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He … editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and … transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … BS in …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a scientific … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began learning …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s … a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the students …
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Ben Bowen
Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite …
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