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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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Advancing Genome-Resolved Metagenomics beyond the Shotgun
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A pipeline for targeted metagenomics of environmental bacteria
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CoverM: Read alignment statistics for metagenomics.
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Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
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The Airborne Metagenome in an Indoor Urban Environment
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … CouR, a MarR family transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, 595-607. … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … diverse substrates, and also photosynthesis genes including potential light-driven proton pumps. “We’re seeing that this …
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Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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