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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. … team started small, in the tradition of agile design and development,” said Linda Setchell, a Truss product manager …
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JGI Announces 2025 New Investigator Portfolio
… novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part … Science Program , allows us to work and share our tools with a widening circle of researchers whose work aligns with … November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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DOE JGI Interns Share Their Summer Experiences
… part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two … and math (STEM) fields. This summer, they worked with Zhong Wang’s and Tanja Woyke’s groups, respectively. Each of the interns spoke briefly about their time at the JGI at …
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JGI & KBase at PAG XXVII
… by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to … with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics … Research (BER) Plant Genomic Science on current and ongoing developments toward integrative biology. Researchers who are …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to assess the …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … other words, some like it hot; some do not. “We can think about the ocean, naively, as a sort of homogeneous medium. …
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Len Pennacchio
Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … DNA Synthesis, and Metabolomics) as well as Research & Development in all of these areas. Additional duties of this … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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Kjiersten Fagnan
Research Division.. As a postdoc, her research focused on stable and accurate computational methods for … of the Networking and Information Technology Research and Development (NITRD) Program Chair of the Bike East Bay Board … 2018 NERSC, CRD Petascale Postdoctoral Fellow … Education … About the JGI Chief Informatics Officer … Selected …
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JGI@25: Building a Better Bean
… may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … of which are particularly important for child growth and development, as well as a vital economic player, as a cash … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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