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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating … researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of … to encourage innovative research exploiting a diversity of capabilities to generate datasets beyond what each facility …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, … generated across disciplines  These advanced computing capabilities meet the needs of scientists out in the field, …
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W. Berkeley Kauffman
… utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, single-particle …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked …
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Genome Insider
… Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of …
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Ben Bowen
… Ruebel, O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and … algorithm for metabolite identification in metabolomics. Analytical chemistry, 86(19), 9496–9503. … Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental … research community.   We have two key priorities:  The JGI is involved in efforts to integrate data in support of …
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2023 Progress Report
… of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific …
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Tour the IGB
… zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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University of California, Merced Internship Program
… Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader … efforts in developing and applying plant single-cell capabilities for DOE mission questions. One of the  first …
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