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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … keeps its DNA more organized. “The big surprise of the project was to realize that these genome copies that are …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Gut Fungi: Unexpected Source of Novel Chemicals
… Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for …
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Atif Shahab
… of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of … Information Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …
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