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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid … Weizmann Institute of Science in Rehovot, Israel, where he studies single-celled algae in the ocean. “Although … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary … additional microbes that contribute to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… from largely observational to reproducible mechanistic studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … to better manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA … field sampling and lab cultivation. “We need those lab studies to really understand what the organisms can do. And …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the breadth of this study, researchers around the world are continuing to build on Hungate 1000 genomes and cultures to …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful comparative genomics studies. …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development … students developing skills in fungal biology and genomics. Fungi can be better understood through reference genomes, …
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