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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … of the Microscale Applications group at the JGI, whose team uses a semi-automated, standardized process to carry …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The … applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … complex issues into achievable tasks, and an ability to get teams to align and reach the associated goals. Mr. Wilson …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and Roux, has an …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … University and senior author of this work.  North led the team that did this work. His group from the Ohio State … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … going on in soil, including  carbon cycling .  The team was led by researchers from the Pacific Northwest …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … unknown or uncertain function. These genes would allow the team to express this library of encoded proteins at high …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the … National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent … power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In the same …
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