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Dealing with Drought: Uncovering Sorghum’s Secrets
… such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … handles droughts, floods and poor soils. This is the first paper that describes sorghum’s response to drought, …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using … Biology. (Wayne Keefe/Berkeley Lab) For example, the JGI first used CRAGE to engineer domesticated bacterial strains …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … of 410 rumen microbe genomes. The project relied upon resources from laboratories around the world, encompassing … provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the breadth of …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope … in the environment. Eloe-Fadrosh and Roux are part of the first cohort to receive Early Career Development awards as …
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Four principles to establish a universal virus taxonomy
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … with high-performance computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., Prabhat, … Google Scholar. … Education … Awards and Honors … Selected Publications …
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Picking Up Threads of Cotton Genomics
… , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … portal  Phytozome , which is a community repository and resource for plant genomes. They are annotated with the JGI … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Building on Experience, With a Twist?
The first time I did this internship in the summer of 2020, it …
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JGI-UC Merced Interns Share Their 2021 Experiences
… in professional development enrichment activities. For some students in the 2021 cohort, this was their first internship experience, while others further along in … new skills needed for their PhD research. And for the first time in this program’s history, two interns returned …
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A One-Stop Shop for Analyzing Algal Genomes
Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … bioenergy and the greater bioeconomy. By bringing together publicly available genomic data on algae into one place, … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. PhycoCosm …
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A One-Stop Shop for Analyzing Algal Genomes
Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … bioenergy and the greater bioeconomy. By bringing together publicly available genomic data on algae into one place, … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. PhycoCosm …
Learn more

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