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JGI User Executive Committee Expands
… that are not easy to break down, as well as developing synthetic biology tools that can help produce value-added products …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… can support biological data analysis. It is a free, open source analytics platform provided to the research … how KBase can support your CSP data. The proposal call is open year-round, but proposals submitted by September 21, 2020, will be included in the next review. Q&A from the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… them. Based on data reported in the April issue of Soil Biology and Biochemistry , the team found that fungi are … This work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports …
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The Case for Conservation
… Study of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the University … of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within … recognizes distinguished research achievements that support open data practices, development of standards and processes …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … seeking to download all the data associated with the latest version of the plant portal, weren’t able to complete this …
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New and Improved: Eucalyptus Reference is Now Accessible
… | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been … have relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with … genome assembly and annotation. Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was …
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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Introducing New Members of the JGI User Executive Committee
… Fungal biologist Stajich from UC Riverside sees the JGI’s open application process for proposal calls as an … terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Zhong Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery … Wang Mentors: Tomoya Honda, Dung Mai Project:  Designing Synthetic Chemoreceptors for Neurotransmitter Sensing   …
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A Community Resource for Secondary Metabolite Researchers
… metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … (IMG/M) system known as IMG-ABC. That portal contained biosynthetic gene clusters and secondary metabolites …
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