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Metagenome Program
… viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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Cataloging the Microbes that Manage the Health of River Systems
… provided multiple access points to the information. The team harnessed a community-science program to collect … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 2021, which aims in part to build off of this work. Former JGI postdoctoral scholar Margot Bezrutczyk collaborated … irregularis. To see how these organisms cooperate, this team applied  R. irregularis spores directly to  M. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 2021, which aims in part to build off of this work. Former JGI postdoctoral scholar Margot Bezrutczyk collaborated … irregularis. To see how these organisms cooperate, this team applied  R. irregularis spores directly to  M. …
Learn more
Help from Citrus’ Bitter, Hardier Cousin
… fruit to go unripened and a blotchy yellowing of leaves, a team of researchers sequenced  P. trifoliata ’s genome. … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses repeatedly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, …
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The Case for Conservation
… question. In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this … such as photosynthesis and gene regulation.  Mock and his team then linked those species-level observations with data …
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Evolution of a Fungal Gene Expression Regulator
… their genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk … me, previously I had I don’t know how to communicate with team members previously. I think I may keep doing research, …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began soon after the JGI was established to work on the … genome sequence of green millet ( Setaria viridis ). The team of researchers at the Danforth Plant Science Center …
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