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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems … team led by Petr Baldrian of the Czech Academy of Sciences first needed to build a detailed database on the …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about …
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2024 Progress Report
… Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … April 2024 — through serving an increased number of users with a record output of products, making data easier to …
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Building Sphagnum Genomic Resources
… insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number … These resources would provide the research community with the ability to address questions such as sphagnum’s …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative between …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus … genome assembly generated through the JGI’s Community Science Program will help support targeted genetic breeding …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Open Frameworks Training the Next Generation of Scientists
… provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and … for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … published in the  Proceedings of the National Academy of Sciences (PNAS), offers more ways for scientists to explore … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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