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Access to Rock Star Scientists
… Interactions “The summer internship has further confirmed by desire to pursue a STEM career, specifically in a … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & …
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Rex Malmstrom
… bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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The endosymbiotic box of protective tricks
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … the nuclear genome over evolutionary time. They also discovered more than 6,000 mitochondrial sequences previously …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … author David Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) …
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JGIota: Sequencing Shiitakes with David Hibbett
… special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … products.    The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated … foundation for metabolic engineering in oleaginous algae. By creating a telomere-to-telomere nuclear genome assembly, …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to … of the JGI’s DNA Synthesis program and a co-author on the paper. First a pathway, then a purified enzyme (and a …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … the efficacy of this approach would be greatly increased by having the ability to reconstruct complete genomes of … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: hot spring-dwelling … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a …
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