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Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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Natural Prodcast Episode 11: Marnix Medema
… in there to find new antibiotics. And, as many projects in bioinformatics, what, something that was born out of … episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on …
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Partnerships: Adopt-A-Genome
… some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … Island, as a Senior Scientist at Warp Drive Bio, and as a bioinformatics HPC consultant with NERSC. Dr. Udwary …
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Webinars on Offerings & Capabilities
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … design and implementation of computational biology and bioinformatics approaches in support of meeting DOE mission …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …
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