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… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … Genomics, there was a subsection of that called ABC, the Atlas of Biosynthetic Clusters. And at the time, it was a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here … … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … classroom modules Testimonials: … A primary purpose of this project is to bring educators from a broad range of …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … evolutionary time scales.The Metagenome Program combines large-scale, time-series metagenomic data with detailed … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … …

… an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … clusters. So, in the ABC portal here at JGI, ABC being the Atlas of Biosynthetic Clusters , which is a subsection of …

It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben … active in a heterologous host. So what you really need is a large tool kit of pieces in order to put them together to …

… user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status … ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of …

… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … before yours, we had Roger Linnington on to talk about NP Atlas. And we got talking about what it would take to expand …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … and helping to concentrate it. But that’s the next project.  DAN: Thanks.  ALISON: We had talked a little bit … products is that we don’t know what all the biosynthetic gene clusters look like.  DAN: For sure.  MARCY: We have so …