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A Guide to Gene‐Centric Analysis Using TreeSAPP
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Tanja Woyke Elected to American Academy of Microbiology
… (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has … to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to … and environmental genomics.” Along with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason …
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How to Target a Microbial Needle within a Community Haystack
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP helps researchers develop technology that can then be made available to JGI users in order to address pressing energy and environmental …
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Tracing the Evolution of Shiitake Mushrooms
… sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … JGI (https://ror.org/04xm1d337), a DOE Office of Science User Facility, was supported by the Office of Science of the …
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Computationally Classifying Fungal Lifestyles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have … 25  Dothideomycetes species, and also provides more information about speciation events. … The work conducted by …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 2021 Laboratory Directed Research and Development (LDRD) program. Cole also received a DOE  Early Career Research … this spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because …
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Igor Grigoriev
… industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome Institute, a Senior … to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the … workshops. … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about the …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI … would work well in further experiments, so she could glean information about their specific function, filling in our …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs custom … and other functional genomics datasets generated by JGI user science projects. … BS in Biochemistry and Biological …
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Annotation of metagenome short reads using proxygenes
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