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2024 Progress Report
… Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … X Plus, and the latest long-read technology, the Pacific Biosciences Revio. They enable increased capacities and faster …
Learn more
Building Sphagnum Genomic Resources
… insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number … Joint Genome Institute supported by the Biological Systems Science Division and the  Spruce and Peatland Responses …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) … Genome Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest …
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A User-Centered Approach to Accessing JGI Data
… through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the …
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Cultivating Symbiotic Antarctic Microbes
… they are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and … host cells. In the  Proceedings of the National Academy of Sciences , a team led by Rick Cavicchioli at the University … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative between the  U.S. Department of Energy …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … genome assembly generated through the JGI’s Community Science Program will help support targeted genetic breeding … efforts of the  U.S. Department of Energy (DOE) Office of Science Biological and Environmental Research program to …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the Encyclopedia …
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Tanja Woyke
… Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at the University of California, Merced's School of Natural Sciences since 2015. Prospective users with specific … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User Programs. …
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Open Frameworks Training the Next Generation of Scientists
… provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology … Computational Research Opportunities Network), a National Science Foundation-funded program, for advancing student …
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Kjiersten Fagnan
… the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also … National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). … Jacobsen and D. Skinner and N.J. 2014. Wright Extreme Data Science. Big Data and Extreme-Scale Computing Conference . …
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