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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … Our Plant Gene Atlas resource addresses that by providing standardized experimental conditions, tissue types, and … Growing different species poses significant challenges, as establishing standardized growth protocols demands time, and …
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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about … North Central College, Naperville, IL BS in Computer Science, North Central College, Naperville, IL …
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Webinar: Introducing the BioSANS capability
… The BioSANS instrument is at the Center for Structural Molecular Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … address some of the most pressing challenges of our time. For more information, please visit  …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … Now, researchers have brought many reference genomes and sequences together at once, producing a pangenome resource …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … piecing each genome together from large mixtures of genomic sequences. A complementary approach to this is single cell …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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A User-Centered Approach to Accessing JGI Data
… the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … unrestricted). The Data Portal presents the users with the standard  JGI Data Release Policy information when they … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Tanja Woyke Elected to American Academy of Microbiology
… of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … bacteria and archaea from previously understudied clades, establishing their evolutionary relationships and leading to …
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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library …
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