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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce their own food and … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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Synthesis
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led … populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. The …
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Promoting the Power of Viral Metagenomics
… that infect organisms much smaller than humans, like bacteria, this power is not surprising at all.  In fact, … For example, viruses which infect the photosynthetic cyanobacteria found throughout the planet’s oceans can exert … Currently one of the best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that …
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
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Jeremy Schmutz
… of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to … to continuing to develop strategies for plant genome sequencing, he manages the de novo plant assembly and the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… that discovery, DGRs have been found in other viruses, bacteria, and archaea. But how widely distributed they are, … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head …
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Soil virus offers insight into maintaining microorganisms
… distinct from similar proteins found in archaea, fungi or bacteria. Certain similarities with bacterial counterparts suggest the viral versions of the … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Virus Discoveries that Keep Getting Bigger
… , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of giant viruses … to provide a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of … single cell methods — involving flow cytometry and sequencing of single viruses or single host cells harboring …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Learning to Look
… case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … enter and exit through the cell membrane without lysing the bacterial host. They can also influence their host’s growth …
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