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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and … of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which … in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … Neri et al., 2023. Expansion of the global RNA virome reveals diverse …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of … Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 …
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Mike Sneddon
… genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at … J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … efficient than glycolysis., Nature Chemical Biology , 2024 Dubinkina et al., A transcriptomic atlas of acute … Issatchenkia orientalis strains., Microbial Spectrum , 2024 Wu et al.Metabolic engineering of low-pH-tolerant …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology … flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. … Rhizopus microsporus." Nature Communications 16, no. 1 (2025): 3843. McCahill, Ian W., Logayn T. Abushal, Bahman …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual … no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid genome evolution revealed by a …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards …
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