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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … is part of another project led by Owen White at the University of Maryland, Baltimore. Both projects will build …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … capabilities.    Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing …
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Understanding Wildfire Recovery, Starting in Soil
… and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … This work brought together researchers from Colorado State University, the US Forest Service, New Mexico State … DOE Office of Science National User Facilities in a single project. …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … In The ISME Journal, a team led by researchers from the University of Konstanz and the University of Vienna  …
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2025 NeLLi Symposium
… $250      Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research … take place at The Marjorie Barrick Museum of Art at the University of Nevada, Las Vegas. The poster session will be … Institution (WHOI) John M. Archibald, Dalhousie University Matthew Brown, Mississippi State University Anne …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose … responsibility and accountability Promote utilization of JGI products and services while nurturing a fresh cohort of …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon … research at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate …
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Gut Fungi: Unexpected Source of Novel Chemicals
… A team led by Michelle O’Malley, a chemical engineer at the University of California (UC), Santa Barbara, collected the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating …
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