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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the … The purpose of the program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  here ) describes how …
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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (DOE) Joint Genome Institute, a DOE Office of Science User Facility, and supported by the Office of Science of the …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … and metabolites associated with the tree’s stress response. Finally, using transcriptomics, researchers were able to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; … Lauren Stadler, Tingting Xiang and Sheree Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community … approaches to unravel functional capabilities of plants, microbes and microbial communities, and …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … The Metagenome Program focuses on the high-throughput sequencing of microbial …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it …
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Access to Rock Star Scientists
… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. … for all protein-coding genes belonging to each genome. The final dataset – available to the research community on an …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team … — I’m always glad to pay it forward,” said Wint, now in her final year of PhD research at UC Merced. She plans to …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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