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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Ben Bowen
… supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical …
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Danielle Goudeau
… and 16S sequencing. She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …
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Statement on the Use of Genomics Data
… to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that … the ability of the principal investigators of approved JGI user projects to publish the primary report of their data … NCBI systems. In addition, the JGI issued a Request for Information (RFI), closing April 21st, 2021, to solicit …
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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A Model System for Perennial Grasses
… The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the culmination of nearly a decade of … adaptation and tolerance to stressors such as drought. This information can be applied toward improving crop yields in …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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A Natural Mechanism Can Turbocharge Viral Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called … (NERSC), a U.S. Department of Energy Office of Science User Facility operated under Contract No. DE-AC02-05CH11231. …
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Natural Prodcast Episode 2: The Primer, Part 2
… of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You can find links to transcripts, more information on this episode, and our other episodes at … air, email us at [email protected] .  And because we’re a User Facility, if you’re interested in partnering with us, …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly … forms of communication. This intricate code carries the information necessary for life's processes, making it a … to the financial sector — whether to identify studies and protocols or analyze and predict market trends. “Genomes do …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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