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… on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The … ecosystem-level nutrient cycling and carbon storage. For example, the marine algae  Emiliania huxleyi, a …

… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … about the project. The story is reposted here in modified format; their conversation has been lightly edited and …

… improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | … in much larger and more complete segments. This allows for more accurate and detailed comparative genomic analyses. …

… For the first time, a team analyzes the transcriptomes of a … that colonizes Brock and gives him super strength. For lichen, the partnership is more commonplace — though … research, many of the symbiosis’ details remain unclear. For the first time, a team has analyzed in parallel the …

… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying … portion of the Arkansas River that’s just a little west of Fort Collins, near a city called Leadville. ED:   And, uh, …

… the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …

… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … (SMC) has launched as an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … the JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. “JGI …

… also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … to realize our new vision to, “ Lead genomic innovation for a sustainable bioeconomy ” — as articulated in our new … processed 13,700 metabolomics samples With our users, 247 publications were published   …

… of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … intuitive interface, deployed on much more maintainable software and hardware infrastructure. Phytozome v13 has been … attempted to make sure users will continue to have straightforward access to all the data in Phytozome v12, and that …

… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … up with him recently. “So, there’s going to be a need for these biofuels and that’s a good niche market for … evolution of sequencing technologies and the evolution of bioinformatics.”  P. pachyrhizi has a very large and complex …

… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … components present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial …