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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample … Metagenome Program Head at the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science … Florida Everglades ecosystem. There are no roads or real human traffic through this remote part of the Everglades. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … of Lawrence Livermore National Lab also played key roles in creating sessions where attendees could focus on …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … a foundation that allowed the scientists to interrogate the roles that terpenes play in nature. The research …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Berkeley is interested in better characterizing the role endosymbiotic bacteria play on mating habits of …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … implicated in developmental and disease processes in the human genome. In addition to his appointment at the DOE …
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … directly from samples sidesteps these challenges, since it doesn’t require this kind of lab culture. Beginning in the … substances from the environment, viruses could play a role. “If you want to do anything with a microbiome — you …
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