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2024 Progress Report
… of Energy and Environment Meeting, which attracted 276 in-person attendees with a rich agenda across our …
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Jeremy Schmutz
… co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., … al. 2018. The genomic landscape of molecular responses to natural drought stress in Panicum hallii . Nature …
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Igor Grigoriev
… by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil … al (2021) Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. …
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Emiley Eloe-Fadrosh
… microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. The National Microbiome … archaea across Earth’s biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an … Nature Biotechnol. 35, 725-731. Paez-Espino D, et al. 2016. Uncovering Earth’s virome. Nature 536 , 425-430. …
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Frederik Schulz
Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … at the interface of simple and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of metagenomic …
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Nikos Kyrpides
… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol …
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Simon Roux
… in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an … standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the quality … across Earth’s biomes. Nature Microbiology 4, 1895–1906. Schulz et al., 2020. Giant virus diversity and host …
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Rex Malmstrom
… of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 …
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Trent Northen
Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al.  SIMILE enables alignment … CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of …
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Yasuo Yoshikuni
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Matt Blow
… and to understand genome function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. … of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet … Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly …
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David Goodstein
… et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus … mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an …
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