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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … such as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon … natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … episode , you’ve heard a little about these, and Aaron and JGI are working together to try to understand the enzymology …
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Marine Microbe Contains Multitudes
Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But SAR324 can be found throughout the … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell types and associated … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of … event is to build a stronger community. Our goal is to create an environment where everyone feels welcome to participate, speak up, ask questions, and engage in conversation. …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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