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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut …
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A Sorghum Pangenome Opens More Doors to Discovery
… genome. This cultivar has been the reference since 2009. In the United States, BTx623 is often used as a parent … and bioenergy production. Together with resequencing of 1,984 cultivars and landraces, these data capture the … program. By producing more genomes of higher quality each year, the JGI provides more insight into plant variation for …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this … from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… challenges.   The Human Genome Project began in 1990 when the U.S. Department of Energy (DOE) partnered with … of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater … high-quality contigs from diverse sources, derived from 219 Tb of raw environmental data. Trained on numerous versions …
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Supercharging SIP in the Fungal Hyphosphere
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The Surprising Structure of a Shrub Willow Sex Chromosome
… distinguish males and females even when plants with multi-year generation times are young and haven’t physically … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also provided by the National …
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Access to Rock Star Scientists
… done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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Back in the Lab: the 2023 Summer Intern Experience
… the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… the globe via their laptops or even smartphones. This year’s three-day conference featured keynote speeches from … progress in gene editing made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who … lane, recounting the earliest days of discovering CRISPR-Cas9, the powerful gene editing technology that resulted in her …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They … Foundation awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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