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A Sorghum Pangenome Opens More Doors to Discovery
… to build this pangenome, including a reassembly of the BTx623 reference genome. This cultivar has been the reference since 2009. In the United States, BTx623 is often used as a parent plant to develop commercial … program. By producing more genomes of higher quality each year, the JGI provides more insight into plant variation for …
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Matt Blow
… of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet … Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet 429:806-10. …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked to … of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… not covered by reference genomes.”  Most of the more than 600 billion base pairs (Gigabases or Gbp) of genetic data … by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater … data used to train GenomeOcean encompasses approximately 645.4 Gbp of high-quality contigs from diverse sources, …
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Supercharging SIP in the Fungal Hyphosphere
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The Surprising Structure of a Shrub Willow Sex Chromosome
… distinguish males and females even when plants with multi-year generation times are young and haven’t physically … of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also … National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …
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Access to Rock Star Scientists
… done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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Back in the Lab: the 2023 Summer Intern Experience
… the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… the globe via their laptops or even smartphones. This year’s three-day conference featured keynote speeches from …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it …
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Eelgrass Proves to Be Much Younger Than We Thought
… study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, … that eelgrass began colonizing the oceans  about 3 million years ago. The study shows that figure is likely closer to a … scientists had to use the genome itself.   Approximately 67 million years ago, the ancestor to eelgrass underwent a …
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