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… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …

… on their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has …

… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …

… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … two U.S. Department of Energy Science Undergraduate Laboratory Internship (SULI) Program students. Sharon Cao worked … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …

… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …

… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute platforms and bioinformatics … Arkin, AP, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature …

… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She … novel flow cytometry protocols for targeted recovery of specific microbes. …

… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …