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… lineages. The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone … spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were …

… all plants, many bacterial cultures, and environmental samples auto-fluoresce, making fluorescent biosensors … to directly measure cyclic di-GMP levels in environmental samples or clinical isolates. As cyclic di-GMP also … signaling network is inefficient on auto-fluorescing samples, rendering this approach useless when applied to …

… and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial genes. These … into genes and even into genomes — from these environmental samples,” said Matthias Hess, first author on the paper and … and that are widely used by many, many scientists.”  Using samples of rumen-digested switchgrass, researchers isolated …

… can learn more about this year’s recipients on our Twitter. Samples were collected from across a permafrost age gradient … near Fairbanks, Alaska. (Courtesy of Mary-Cathrine Leewis) Samples were collected from across a permafrost age gradient …

… on agnostic pathogen detection and surveillance in complex samples. … University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) … Communications. 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). …

… metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore … Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an uncultivated virus genome (MIUVIG). …

… environment of comparable salinity.  Researchers collected samples at several points in time to assess nutrient … and cell death. Immediately upon transfer, the experimental samples exhibited significant stress with a higher proportion of dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By …

… the biodegradation process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy … strain’s genome sequence was not in IMG/M when the NRAP samples were originally analyzed a decade ago. The NRAP site …

… hiked, rafted and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop …

… root, leaf and rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the … at the KARE field site and then collect and process the samples starting at 10am Pacific time. JGI researchers … design, sequenced the RNA from nearly 400 root and leaf samples and helped analyze the sequencing datasets. The …

… profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI …