A mountaintop emerges from a forest landscape against a blue cloudless skyCongratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab).

“We’re very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a JGI proposal,” said Tanja Woyke, JGI’s deputy of User Programs. “The proposed research by these PIs will address a broad diversity of important scientific questions relevant to the DOE mission, and we look forward to facilitating their success. “

The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and Environmental Research (BER) missions in: sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and biogeochemistry. You can learn more about this year’s recipients on our Twitter.

Samples were collected from across a permafrost age gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of Mary-Cathrine Leewis)
Samples were collected from across a permafrost age gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of Mary-Cathrine Leewis)

This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, understanding natural communities important for carbon storage, nutrient cycling, and climate change; and biofuels, biomaterials and bioproducts. Learn more about our proposals, including how to apply, here on our website.

The approved proposals start October 1, 2022. See the full list of awardees below:

NameInstitutionProposal Title
Blonder, BenjaminUniversity of California at BerkeleyIdentifying the genetic basis of complex phenotypes and climate adaptation in quaking aspen (Populus tremuloides)
Chen, JayOak Ridge National LaboratoryLeveraging Natural Variations to Uncover Regulatory Mechanisms Governing Differential Biosynthesis of Terpenes in Populus
DeAngelis, KristenUniversity of Massachusetts AmherstSoil microbial stress-biogeochemistry metabolism adapts under climate change across seasons
Dinneny, JoseStanford UniversityUnderstanding the mechanisms of metabolic exchange in the rhizosphere
Humphries, JacquelineAmyris, Inc.A high-throughput, multi-omics approach to identifying new gene expression modules for industrial bioproduction in alternative fermentation hosts
Krasovec, MarcNational Center for Scientific Research (CNRS)Phytoplankton spontaneous mutation rate
Leewis, Mary-CathrineAgriculture and Agri-Food CanadaLife in Ancient Permafrost: using an isotope and ‘omics approach to determine how microorganisms survive and metabolize in subzero temperatures across geologic time
Lofgren, LotusDuke UniversityFunctional roles of secondary metabolism in ectomycorrhizal fungi
Majumder, EricaUniversity of Wisconsin-MadisonCharacterization of plastic deconstruction metabolic pathways in microbial communities derived from enrichments of plastic debris in soil and landfill samples
Nagy, LaszloBiological Research Centre of the Hungarian Academy of SciencesA genome-wide view of the evolution of the most widely used lignocellulose-degrading Basidiomycota
Nunn, BrookUniversity of WashingtonInvestigating the interactions of a phytoplankton community and its microbiome on a 4-hour timescale to reveal emerging and predictive properties across an algal bloom and bust cycle
Ohm, RobinUtrecht UniversityFunctional genomics of the lignocellulose-degrading fungus Schizophyllum commune: regulatory networks, sustainable fungal materials and fungal defense
Pawlowska, TeresaCornell UniversityUnraveling the mechanisms behind the role of endosymbiotic bacteria in community structuring and evolution of Mucoromycota fungi
Saleska, ScottUniversity of ArizonaPrimary succession of plant and microbial life: untangling inter-organismal interactions on a model early-successional landscape
Wakao, SetsukoLawrence Berkeley National LaboratoryEvolutionary genomics of biomineralizing stramenopiles with impacts on global carbon cycling and biogeochemistry
Weimer, BartUniversity of California, DavisThe role of carbohydrate and nitrogen fixation for sustainable plant microbiome interactions
Wilbanks, ElizabethUniversity of California Santa BarbaraThe role of population distributed immunity in the eco-evolutionary dynamics of bacteria and phage
Wilhelm, StevenUniversity of Tennessee, KnoxvilleDirect resolution of virus-host interactions using bulk single-celled labeling and application to deep community metatranscriptomics
Wolfe, MarninAuburn UniversityClover Genomics for Sustainable Bioenergy Mixtures
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