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… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …

… the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Huntemann, Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of … for cassava are available on the JGI plant portal Phytozome.     …

… Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … of plant evolution and could lead to advancements in improving plant resilience and productivity. The algal …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an … functional genomics, because this work is essential for improving crop resilience through climate change. Ti’Yanna …

… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …

… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … they always cluster or could the genes be separated on a genome?  Dan: Oh yeah. It’s biology so anything is possible … then to have secondary metabolism in proximity within the genome so that things can transfer.  Plants are a different …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … And then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did … Yeah, that was a really fun project. So we got the Joint Genome Institute interested in a marine obligate …