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Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  … available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … are considering Q (re Jenny Mortimer’s presentation):  What stressors do you think are affecting your results – could it …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … multiple products, resulting in many antibiotics. To uncover the enzymes, the team used a battery of techniques. … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  …
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Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … to inform the engineering of stable, synthetic microbial communities to take advantage of their joint metabolisms. … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold … extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Computationally Classifying Fungal Lifestyles
… provide more insights into how these fungi have adapted to stress and host specificity, particularly regarding the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. Researchers were … in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels change … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Jeremy Schmutz
For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … genomic landscape of molecular responses to natural drought stress in Panicum hallii . Nature Communications 9: 5213. …
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A Community Resource for Secondary Metabolite Researchers
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal contained … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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Single Cell Research Group
… as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential of uncultivated lineages is … reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.” Nat Biotechnol 35(7): 676-683 … Visel A., Woyke T ., Wang Z. & Rubin E.M. Metagenomic discovery of biomass-degrading genes and genomes from cow …
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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … landscape of vertebrate genomes, which led to the discovery of thousands of genetic switches implicated in … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel …
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