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A User-Centered Approach to Accessing JGI Data
… metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. Eventually, he added, the Genome Portal will be retired once the same features are … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … (INRAE) and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Mike Sneddon
… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic … Academy of Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and Emonet, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … cool intermediate to the ocean’s extremes of about 28° and 97° Fahrenheit. “The study authors point to this fundamental … is impacting these marine communities,” said Mock. The greenhouse gas carbon dioxide (CO2), produced from the …
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VEGA Symposium
… Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years …
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2025 Progress Report
… Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … its closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in … as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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Accelerating Metagenomics Discoveries with Deep Learning
… biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and … contigs (inferred chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … different environments. He’s been involved in several plant genome projects through the Community Science Program. As a … encourage more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Tanja Woyke Elected to American Academy of Microbiology
… Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied …
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