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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) … Science Foundation to J.M.N. (NSF 1501826), from the Japan Society for the Promotion of Science KAKENHI (JSPS …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and … The work conducted by the US Department of Energy Joint Genome Institute ( …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … majors at CSU-San Marcos. That course has since expanded into three other universities. You can learn more …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … This work conducted by the U.S. Department of Energy Joint Genome Institute …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She …
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