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… is also focused on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel … plant and fungal single-cell and spatial transcriptomic technologies, as described in the JGI Strategic Plan. The … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… in: sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and biogeochemistry. You can … understanding natural communities important for carbon storage, nutrient cycling, and climate change; and …

… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … study in  Nature Communications , a chitosanase, is tied to carbon cycling and plays an important role in how carbon is … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis …

… than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … contribute to an estimated 50 percent of the world’s fixed carbon, altering the balance of eukaryotic and prokaryotic communities could alter the global carbon cycle, the rates at which carbon globally is fixed …

… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by …

… scientist on projects to develop functional genomic technologies and to understand genome function in bacteria. … In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly conserved heart enhancers. Nat …

… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver water and nutrients. In order to … to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first …

… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … responsible for piloting and operationalizing new genomic technologies, integrating automated liquid handling and … production workflows. He developed and scaled the multiDAP-seq assay, a method that enables high-throughput …

… new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of … the air we breathe and the fuel for food webs as they turn carbon dioxide and water into oxygen and sugars. How … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …

… in the ocean drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. … microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures rise, so do … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …

… have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … genome project. And that was a JGI CSP project. They sequenced that genome for us at a time when they would do … secondary metabolism is everywhere, right? And so we also sequence a lot of fungi, and we sequence plants. And so we …

… economic value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety of … into how these ecosystems cycle nutrients like nitrogen and carbon, as well as improving the tree’s production as a …