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… products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de Raad M, …

Metagenomic datasets could help map out microbial diversity … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that …

… on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux are part of … to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and …

… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it … within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal contained … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 …

… aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an international research …

… at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …

… including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …

… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed …

… at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects … 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics … plans to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of …

… , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV …