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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of the sequences. The variety of palindromes observed in nature — for example, in humans Y chromosomes and some …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … pressing energy and environmental scientific challenges. In Nature Microbiology , a team led by longtime JGI …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … in host bacteria Rhodospirillum rubrum . Their work in Nature Catalysis details an enzyme system that was … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. … The DNA Synthesis Science Advisory Committee is chartered to offer advice, guidance and counsel on the effective …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … these barriers are falling. As  published online in  Nature Plants  on July 15, researchers have developed …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… collaboration is available for licensing. The Science In  Nature Communications , researchers describe a strategy to … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome …
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