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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … ). “We have made a concerted effort to create a common set of ‘baseline metadata’ across the files that are submitted …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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JGI Welcomes New UEC Members
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the … a breadth of institutions, research topics and career stages. The election period concluded on October 21. The … three new UEC members. They are: Kathleen Greenham of the University of Minnesota, Matthias Hess of the University of …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … program, while Oliver Benelli applied through the University of California's  CalTeach initiative. During … My name is Sally Liao. I am a rising junior at Northwestern University. I'm in the SULI program, and I'm studying …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided … would it be possible to add a feature to look for synteny of the target genome with itself, to identify regions that …
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Annual Genomics of Energy & Environment Meeting
… the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes this … goals. Keynotes: M. Francesca Cotrufo, Colorado State University N. Louise Glass, UC Berkeley Ian Foster, Argonne National Laboratory Sue Rhee, Michigan State University   …
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Webinar: Introducing the BioSANS capability
… Molecular Biology at ORNL Himadri Pakrasi, Washington University in St. Louis on “Solar Energy Conversion in Cyanobacterial Membranes” Marcus Foston, Washington University in St. Louis on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at Urbana-Champaign and at Argonne …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … He and  Tringe were also involved in a study that applied metagenomic capabilities to  studying phytoplankton … the nuances of the plant’s genome . A candidate bioenergy feedstock, switchgrass has adapted to expand its habitat …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National … of the CSP to encourage more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal …
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Emiley Eloe-Fadrosh
… to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … research at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare …
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