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DNA Synthesis Science User Advisory Committee
… Science User Advisory Committee is chartered by the Program Head and report back to them. The Committee is … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external … scientific relevance and quality. The Committee does not perform management functions nor do they direct the Program's …
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Earth BioGenome Project: Sequencing life for the future of life
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Igor Grigoriev
… industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. …
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Data Ecosystem
… its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse …
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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… leaf surface. More specifically, they found that microbial community composition and functional potential varied across … Office of Science’s Biological and Environmental Research program because of its relevance to understanding the … of plants and influence nutrient turnover over the course of a leaf’s life. Additionally, the phyllosphere …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship … effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 Doing the JGI internship has … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI …
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Webinar: PhycoCosm Tutorial
… tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you … for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through … A: Combination of: DOE mission relevance Science User community – trying to produce resources for large groups of …
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A Grass Model to Help Improve Giant Miscanthus
… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Leo Baumgart
… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Taking Stock of the Known and Unknown Microbial Space
… microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the … can go and reinvest time and effort in recovery.” The team plans to convene a discussion later this year related to …
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