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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … was born, of about 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, … lifetime, right? Or maybe two generations. And so, you know, and the real question is, can we do this without, you …
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The Case for Conservation
… purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and … plants, each representing a single set of chromosomes, are available. The genome assemblies highlight the multiple … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the world … Still, the team estimates that genomic information is only available for a fraction of extant actinobacterial …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For … National Laboratory (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. … Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ Microbiol … Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. Blow et al 2016. The …
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Moderate High Temperature is Beneficial or Detrimental Depending on Carbon Availability in the Green Alga Chlamydomonas reinhardtii
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Len Pennacchio
… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he was named …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California (UC) San Diego, being on the UEC is an opportunity to …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in … of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  …
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2024 Progress Report
Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … NERSC, JGI researchers  more than doubled the number of known protein families by using AI clustering algorithms to …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … 2014 LBNL Director’s Award for Exceptional Achievement 2009 LBNL Outstanding Performance Award 2006 AHA Lievre … Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA (2009). ChIP-seq accurately predicts tissue-specific activity …
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