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New and Improved: Eucalyptus Reference is Now Accessible
… it separately represents the sets of chromosomes inherited from each parent. It also has 700-fold greater contiguity, … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … hypothesizes the difference might not be due to repeated sequences, but rather the more accurate assembly of regions …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers … in the SEED Scholars @ LBNL program,  with support from  the SEED program at UC Berkeley. Sally Liao came in … people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been …
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Nick Everson
… departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … 2015 Served on the Council of UC Staff Assemblies (CUCSA) from 2015 to 2018, representing Berkeley Lab in this UC-wide …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying … mentors, postdoc Yumary Vasquez, was herself a program alum from the 2022 cohort.  The UC Merced interns attended … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… the power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In … Network (NEON) , and now the APS as well. Presentations from: Mary Lipton , EMSL: Introduction to the Facilities … to submit a FICUS proposal? A:  We work with people from all around the world and at different career level …
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Kjiersten Fagnan
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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A Complex Confection Decoded: Sugarcane Reference Genome
… to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane … and took more than a decade because there were pieces from multiple boxes, including some duplicates, to sort … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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JGI Advisory Committees Code of Conduct
… the trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars …
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