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New and Improved: Eucalyptus Reference is Now Accessible
… | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been widely … relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with … more robust reference genome, researchers have unlocked new information on the structural diversity of eucalyptus. The …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the … inside DNA to the cell, RNA viruses store their genetic information in RNA without a DNA stage. “I would argue RNA …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… without some kind of test to even look if these genes are expressed, you have to be very agnostic and very careful,” … United States, and is working to address some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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A Sorghum Pangenome Opens More Doors to Discovery
… from a much broader view than ever before. With this information, researchers can link genetic variation more … United States, and is working to address some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Leo Baumgart
… in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. Martínez, … deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate embryo and root development." Plant …
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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Taking Stock of the Known and Unknown Microbial Space
… playing key roles in regulating global nutrient cycles. The information gained from understanding the interactions … publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and on the JGI’s  … genomes in the datasets, however, the team added that this information is still computationally derived. Experimental …
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Natural Prodcast Episode 1: The Primer, Part 1
… why we want to do this. And also to provide a little more information and context for people who might possibly be … one of the one of the fun things that I hope that I can express today is why secondary metabolism is interesting and … on the kind of molecules that they’re sharing and expressing, and that it seemed like we didn’t know very much …
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Natural Prodcast Episode 2: The Primer, Part 2
… metabolites!  DAN: One of the things that I did want to impress, too, is that secondary metabolism is based on primary … National Lab. You can find links to transcripts, more information on this episode, and our other episodes at …
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You Can Move, But You Can’t Hide
… Scientific Computing Center (NERSC) (https://ror.org/05v3mvq14), are DOE Office of Science User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the Genomic … Research (BER) under contract numbers DE-AC02-05CH11231 (LBNL), 89233218CNA000001 (LANL), and …
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Fungus Fuels Tree Growth
… what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … and weaker defenses in general; the fungus decreased the expression of poplar genes associated with plant defense (e.g. … put more energy into growth, noting they increased expression of genes involved in signaling of gibberellin, one …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… of interest.” The combination of field data and genetic information has allowed the research team to associate climate adaptations with switchgrass biology, information that could be useful toward the DOE’s interest … varieties. “It’s going to be important to have all this information in order to facilitate breeding going forward,” …
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