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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative between …
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Webinar: Introducing the BioSANS capability
… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … Scattering (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Better Genome Editing for Bioenergy
… to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing … CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … and Bioprocessing R&D Director and Leader at Dow AgroSciences in Indianapolis. During his time in industry, Dr. … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To demonstrate its …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Berkeley Lab, screened …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome v13. Below …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of achieving a … and infrastructure security. In complement to the Community Science Program, JGI researchers drive innovations that …
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A User-Centered Approach to Accessing JGI Data
… program,” he said. “If each kingdom submits the same category of data (key) for their files as a baseline, we can … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the …
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Data Policy
… user projects accepted FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science (FICUS) initiative, Director’s Science (DS), Biological and Environmental Research Support … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the …
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JGI Portals
… from a single investment will be reused for further science.  NOTICE The Data Portal application has replaced … Portal was replaced with the Data Portal and sunset in 2026. The Genome Portal was designed to provide unified … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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